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Conversion of biomembrane-produced energy into electric form. III. Chromatophores of Rhodospirillum rubrum

Conversion of biomembrane-produced energy into electric form. III. Chromatophores of Rhodospirillum rubrum

1970

Biochimica et Biophysica Acta (BBA) - Bioenergetics

1970

1970

Biochimica et Biophysica Acta (BBA) - Bioenergetics

V. 216, № 1, 22-29

V. 216, № 1, 22-29

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doi.org

Abstract

Abstract

АННОТАЦИЯ

АННОТАЦИЯ

The mechanisms of energy coupling and ion transport in Rhodospirillum rubrum chromatophores have been studied. Photoreduction of NAD+ and photophosphorylation have been measured under anaerobic conditions in the presence of N,N,N′,N′-tetramethyl-p-phenylenediamine (TMPD), ascorbate and antimycin A. The uncoupler p-trifluoromethoxycarbonyl cyanide phenylhydrazone (FCCP), as well as ADP + phosphate, has been found to inhibit the photoreduction of NAD+ in this system. Addition of an electron acceptor, such as methylviologen, fumarate or O2, to antimycin-treated chromatophores initiates the process of photophosphorylation.

Chromatophores of R. rubrum accumulate the penetrating anions, phenyl dicarboundecaborane and tetraphenyl boron, as well as iodide, if the I carrier, di-(pentafluorophenyl) mercury, is added. The anion accumulation can be supported by light-induced cyclic electron flow (NADH → O2, succinate → ferricyanide), by hydrolysis of ATP or inorganic pyrophosphate, as well as by reversal of the energy-requiring transhydrogenase reaction (NADPH → NAD+). The type of energy source influences only the extent of the anion accumulation process.

Cessation of the energy supply (e.g. by exhaustion of the energy source or poisoning of the system by specific inhibitors or an uncoupler) brings about an efflux of the accumulated anions. Uptake of anions is accompanied by alkalinization of the outer solution; release of anions is accompanied by acidification.

It is concluded that there is an energy-dependent charge-specific mechanism for anion accumulation in the chromatophore membrane resembling that found in the membrane of submitochondrial particles. It is stated that the electric field (the “plus” inside the chromatophore) is the motive force for ion transfer through the chromatophore membrane against a concentration gradient. The data on NAD+ photoreduction, noncyclic photophosphorylation and energy-dependent anion transport are summarized as the concept of four sites of energy coupling in the chromatophore redox chain localized at the same steps as in animal mitochondria (NADPH → NAD+, NADH → cytochrome b, cytochrome b → cytochrome c, and the region after cytochrome c). Each of these coupling sites can provide energy for generation of a membrane potential.

The mechanisms of energy coupling and ion transport in Rhodospirillum rubrum chromatophores have been studied. Photoreduction of NAD+ and photophosphorylation have been measured under anaerobic conditions in the presence of N,N,N′,N′-tetramethyl-p-phenylenediamine (TMPD), ascorbate and antimycin A. The uncoupler p-trifluoromethoxycarbonyl cyanide phenylhydrazone (FCCP), as well as ADP + phosphate, has been found to inhibit the photoreduction of NAD+ in this system. Addition of an electron acceptor, such as methylviologen, fumarate or O2, to antimycin-treated chromatophores initiates the process of photophosphorylation.

Chromatophores of R. rubrum accumulate the penetrating anions, phenyl dicarboundecaborane and tetraphenyl boron, as well as iodide, if the I carrier, di-(pentafluorophenyl) mercury, is added. The anion accumulation can be supported by light-induced cyclic electron flow (NADH → O2, succinate → ferricyanide), by hydrolysis of ATP or inorganic pyrophosphate, as well as by reversal of the energy-requiring transhydrogenase reaction (NADPH → NAD+). The type of energy source influences only the extent of the anion accumulation process.

Cessation of the energy supply (e.g. by exhaustion of the energy source or poisoning of the system by specific inhibitors or an uncoupler) brings about an efflux of the accumulated anions. Uptake of anions is accompanied by alkalinization of the outer solution; release of anions is accompanied by acidification.

It is concluded that there is an energy-dependent charge-specific mechanism for anion accumulation in the chromatophore membrane resembling that found in the membrane of submitochondrial particles. It is stated that the electric field (the “plus” inside the chromatophore) is the motive force for ion transfer through the chromatophore membrane against a concentration gradient. The data on NAD+ photoreduction, noncyclic photophosphorylation and energy-dependent anion transport are summarized as the concept of four sites of energy coupling in the chromatophore redox chain localized at the same steps as in animal mitochondria (NADPH → NAD+, NADH → cytochrome b, cytochrome b → cytochrome c, and the region after cytochrome c). Each of these coupling sites can provide energy for generation of a membrane potential.

chaimatics

Chaimatics

Discovery of links between the biology, physics and mathematics, and founding a new area of studies focused on computations in living systems are his life achievements. Efim Liberman gave the name of “Chaimatics” to this new area of science

I

DNA is the text of a code written for molecular computers of living cells. The notion of “Text” is intrinsically opposite to a random sequence of symbols, and it can exist only inside the system of language. In this case, it is a genetic language, which is isomorphic to a natural language

II

Computations conducted in a living cell are real physical actions, and free energy and time must be spent for completing them. As all living organisms are comprised of cells, this statement is applicable to any control processes implemented in the biosphere

III

Molecular computations are limited by the microscopic scale of a cell and inevitable impact of the computations on formulation of a problem begin solved. The Chaimatics grew from the recognition of the computation reality as the quantum mechanics grew from the recognition of the measurement reality.

IV

A cell creates а quantum computing tool for solving complex problems. This tool utilizes hypersound quanta, and uses the cell cytoskeleton as the computing environment. In such a computer, a price of elementary computation converges to the physical limit, which is Planck’s constant

Chaimatic's statements are simple, but they require a change in the traditional vision, rooted in scientific practice

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Chapter I

The journey of life in science

chaimatics

хаиматика

хаиматика

Итогом жизни в науке стало установление связей между биологией, физикой, математикой и новая область исследования, посвященная вычислениям в живых системах. Ефим Либерман дал имя новой науке: «Хаиматика»

I

ДНК – это текст программы для молекулярных компьютеров клеток. «Текст» по определению не случайная последовательность знаков и может существовать только внутри языковой системы. В данном случае это генетический язык, изоморфный естественному языку

II

Вычисление в живой клетке является реальным физическим действием и требует затрат свободной энергии и времени. Поскольку все живые организмы состоят из клеток, это относится ко всему управлению, которое осуществляется в биосфере

III

Молекулярные вычисления ограничены микроскопическим объемом клетки и принципиальной возможностью влияния вычисления на условия решаемой задачи: квантовая механика возникла из осознания реальности измерения, Хаиматика - из реальности вычисления

IV

Для решения сложных задач клетка создает устройство квантового вычисления, использующего кванты гиперзвука и клеточный цитоскелет, как вычисляющую среду. Цена вычисления в таком компьютере стремится к физическому пределу – постоянной Планка

Утверждения Хаиматики просты, но они требуют изменения традиционных представлений, принятых в научной практике

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Глава I

Как все начиналось

хаиматика